Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4zeb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ra1RCSB PDB    PDBbind499aa, >4RA1_1|Chain... *
4zecRCSB PDB    PDBbind490aa, >4ZEC_1|Chain... at 100%
4zedRCSB PDB    PDBbind499aa, >4ZED_1|Chain... at 100%
4zeiRCSB PDB    PDBbind499aa, >4ZEI_1|Chain... at 100%
4zekRCSB PDB    PDBbind499aa, >4ZEK_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4zeb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameSe-PBP AccA from A. tumefaciens C58
Ligand NameAGR
EC.Number E.C.-.-.-.-
Resolution 1.89(Å)
Affinity (Kd/Ki/IC50)Kd=0.3uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Plos Pathog. Vol. 11: pp. e1005071-e1005071
Ligand Properties
Formula C17H32O18P
Molecular Weight 555.399
Exact Mass 555.133
No. of atoms 68
No. of bonds 70
Polar Surface Area 311.73
LOGP Value -7.14      (Computed with XLOGP3)
-7.25      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 19
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q52012  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com