Browse entries in the PDBbind-CN Database

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Related entries of code: 5a5v
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a5dRCSB PDB    PDBbind289aa, >5A5D_1|Chain... at 99%
5ad1RCSB PDB    PDBbind290aa, >5AD1_1|Chain... at 99%
5oahRCSB PDB    PDBbind288aa, >5OAH_1|Chains... at 99%
5od5RCSB PDB    PDBbind288aa, >5OD5_1|Chains... at 99%
5tcyRCSB PDB    PDBbind291aa, >5TCY_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5a5v
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameperiplasmic binding protein CeuE
Ligand NamePXJ
EC.Number E.C.-.-.-.-
Resolution 2.04(Å)
Affinity (Kd/Ki/IC50)Kd=33nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Sci Rep Vol. 7: pp. 45941-45941
Ligand Properties
Formula C20H24N2O6
Molecular Weight 388.414
Exact Mass 388.163
No. of atoms 52
No. of bonds 53
Polar Surface Area 139.12
LOGP Value 3.28      (Computed with XLOGP3)
3.01      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q0P8Q4  
Entrez Gene IDNCBI Entrez Gene ID: 905647  
ASDInformation of known allosteric effects of PDB entries
 
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