Browse entries in the PDBbind-CN Database

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Related entries of code: 5od5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a5dRCSB PDB    PDBbind289aa, >5A5D_1|Chain... at 99%
5a5vRCSB PDB    PDBbind289aa, >5A5V_1|Chain... at 99%
5ad1RCSB PDB    PDBbind290aa, >5AD1_1|Chain... at 99%
5oahRCSB PDB    PDBbind288aa, >5OAH_1|Chains... at 99%
5tcyRCSB PDB    PDBbind291aa, >5TCY_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5oahRCSB PDB    PDBbind95B

Entry Information
PDB ID5od5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCeuE
Ligand Name95B
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=18.3nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat Catal Vol. : pp. 680 - 688
Ligand Properties
Formula C43H49IrN5O9S
Molecular Weight 1004.160
Exact Mass 1004.290
No. of atoms 108
No. of bonds 118
Polar Surface Area 216.99
LOGP Value 3.89      (Computed with XLOGP3)
7.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 20
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 11
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q0P8Q4  
Entrez Gene IDNCBI Entrez Gene ID: 905647  
ASDInformation of known allosteric effects of PDB entries

 
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