Browse entries in the PDBbind-CN Database

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Related entries of code: 5cgd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4oo9RCSB PDB    PDBbind444aa, >4OO9_1|Chain... *
5cgcRCSB PDB    PDBbind444aa, >5CGC_1|Chain... at 100%
6ffhRCSB PDB    PDBbind444aa, >6FFH_1|Chain... at 100%
6ffiRCSB PDB    PDBbind444aa, >6FFI_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5cgd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman class C GPCR metabotropic glutamate receptor 5 transmembrane domain
Ligand Name51E
EC.Number E.C.3.2.1.17
Resolution 2.6(Å)
Affinity (Kd/Ki/IC50)Ki=0.5nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 6653-6664
Ligand Properties
Formula C16H8ClFN4
Molecular Weight 310.713
Exact Mass 310.042
No. of atoms 30
No. of bonds 32
Polar Surface Area 62.46
LOGP Value 2.94      (Computed with XLOGP3)
3.87      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41594  P00720  
Entrez Gene IDNCBI Entrez Gene ID: 2915  1258585  
ASDInformation of known allosteric effects of PDB entries

 
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