Browse entries in the PDBbind-CN Database

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Related entries of code: 5ewm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3qelRCSB PDB    PDBbind364aa, >3QEL_2|Chains... *
3qemRCSB PDB    PDBbind364aa, >3QEM_2|Chains... at 100%
5ewjRCSB PDB    PDBbind364aa, >5EWJ_2|Chains... at 99%
6e7xRCSB PDB    PDBbind363aa, >6E7X_2|Chains... at 100%
6e7wRCSB PDB    PDBbind363aa, >6E7W_2|Chains... at 100%
6e7vRCSB PDB    PDBbind363aa, >6E7V_2|Chains... at 100%
6e7uRCSB PDB    PDBbind363aa, >6E7U_2|Chains... at 100%
6e7tRCSB PDB    PDBbind363aa, >6E7T_2|Chains... at 100%
6e7sRCSB PDB    PDBbind363aa, >6E7S_2|Chains... at 100%
6e7rRCSB PDB    PDBbind363aa, >6E7R_2|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5ewm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGluN1/GluN2B NTD dimer
Ligand Name5SM
EC.Number E.C.-.-.-.-
Resolution 2.76(Å)
Affinity (Kd/Ki/IC50)IC50=12nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Mol.Pharmacol. Vol. 89: pp. 541-551
Ligand Properties
Formula C16H13F3N4
Molecular Weight 318.296
Exact Mass 318.109
No. of atoms 36
No. of bonds 38
Polar Surface Area 43.6
LOGP Value 2.31      (Computed with XLOGP3)
3.77      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q13224  A0A1L8F5J9  
Entrez Gene IDNCBI Entrez Gene ID: 2904  397953  
ASDInformation of known allosteric effects of PDB entries

 
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