Browse entries in the PDBbind-CN Database

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Related entries of code: 5g3m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4uy1RCSB PDB    PDBbind131aa, >4UY1_1|Chains... at 93%
5ow8RCSB PDB    PDBbind123aa, >5OW8_1|Chains... at 100%
5owcRCSB PDB    PDBbind122aa, >5OWC_1|Chains... at 100%
6g5jRCSB PDB    PDBbind165aa, >6G5J_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5g3m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namesecreted phospholipase A2 (sPLA2-X)
Ligand Name9JH
EC.Number E.C.3.1.1.4
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)IC50=2.2uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Acs Med.Chem.Lett. Vol. 7: pp. 884-889
Ligand Properties
Formula C14H13NO
Molecular Weight 211.259
Exact Mass 211.100
No. of atoms 29
No. of bonds 30
Polar Surface Area 43.09
LOGP Value 2.72      (Computed with XLOGP3)
3.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O15496  
Entrez Gene IDNCBI Entrez Gene ID: 8399  
ASDInformation of known allosteric effects of PDB entries

 
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