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Related entries of code: 6g5j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4uy1RCSB PDB    PDBbind131aa, >4UY1_1|Chains... at 93%
5g3mRCSB PDB    PDBbind123aa, >5G3M_1|Chains... at 100%
5ow8RCSB PDB    PDBbind123aa, >5OW8_1|Chains... at 100%
5owcRCSB PDB    PDBbind122aa, >5OWC_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6g5j
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSecreted phospholipase A2 type X
Ligand NameEM8
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)IC50=0.2uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) ACS Med Chem Lett Vol. 9: pp. 600-605
Ligand Properties
Formula C20H17F3N2O4
Molecular Weight 406.355
Exact Mass 406.114
No. of atoms 46
No. of bonds 48
Polar Surface Area 94.55
LOGP Value 5.58      (Computed with XLOGP3)
4.91      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O15496  
Entrez Gene IDNCBI Entrez Gene ID: 8399  
ASDInformation of known allosteric effects of PDB entries
 
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