Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5isl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ivcRCSB PDB    PDBbind330aa, >5IVC:A|PDBID|CHAIN|... at 100%
5iveRCSB PDB    PDBbind330aa, >5IVE:A|PDBID|CHAIN|... at 100%
5ivfRCSB PDB    PDBbind330aa, >5IVF:A|PDBID|CHAIN|... at 100%
5ivjRCSB PDB    PDBbind330aa, >5IVJ:A|PDBID|CHAIN|... at 100%
5ivvRCSB PDB    PDBbind330aa, >5IVV:A|PDBID|CHAIN|... at 100%
5ivyRCSB PDB    PDBbind330aa, >5IVY:A|PDBID|CHAIN|... at 100%
5iw0RCSB PDB    PDBbind330aa, >5IW0:A|PDBID|CHAIN|... at 100%
6bguRCSB PDB    PDBbind330aa, >6BGU:A|PDBID|CHAIN|... at 100%
6bgvRCSB PDB    PDBbind330aa, >6BGV:A|PDBID|CHAIN|... at 100%
6bgwRCSB PDB    PDBbind330aa, >6BGW:A|PDBID|CHAIN|... at 100%
6bgxRCSB PDB    PDBbind330aa, >6BGX:A|PDBID|CHAIN|... at 100%
6bgyRCSB PDB    PDBbind330aa, >6BGY:A|PDBID|CHAIN|... at 100%
6bgzRCSB PDB    PDBbind330aa, >6BGZ:A|PDBID|CHAIN|... at 100%
6bh0RCSB PDB    PDBbind330aa, >6BH0:A|PDBID|CHAIN|... at 100%
6bh1RCSB PDB    PDBbind330aa, >6BH1:A|PDBID|CHAIN|... at 100%
6bh2RCSB PDB    PDBbind330aa, >6BH2:A|PDBID|CHAIN|... at 100%
6bh3RCSB PDB    PDBbind330aa, >6BH3:A|PDBID|CHAIN|... at 100%
6bh5RCSB PDB    PDBbind330aa, >6BH5:A|PDBID|CHAIN|... at 100%
6dq4RCSB PDB    PDBbind330aa, >6DQ4:A|PDBID|CHAIN|... at 100%
6dq5RCSB PDB    PDBbind330aa, >6DQ5:A|PDBID|CHAIN|... at 100%
6dq6RCSB PDB    PDBbind330aa, >6DQ6:A|PDBID|CHAIN|... at 100%
6dq8RCSB PDB    PDBbind330aa, >6DQ8:A|PDBID|CHAIN|... at 100%
6dqaRCSB PDB    PDBbind330aa, >6DQA:A|PDBID|CHAIN|... at 100%
6dqbRCSB PDB    PDBbind330aa, >6DQB:A|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5a3tRCSB PDB    PDBbindMMK
5fwjRCSB PDB    PDBbindMMK

Entry Information
PDB ID5isl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLysine-specific demethylase 5A, Linked KDM5A Jmj Domain
Ligand NameMMK
EC.Number E.C.1.14.11
Resolution 1.69(Å)
Affinity (Kd/Ki/IC50)Kd=0.052uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Cell Chem Biol Vol. 23: pp. 769-781
Ligand Properties
Formula C15H26N4O3
Molecular Weight 310.392
Exact Mass 310.200
No. of atoms 48
No. of bonds 48
Polar Surface Area 91.55
LOGP Value -1.68      (Computed with XLOGP3)
-2.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P29375  
Entrez Gene IDNCBI Entrez Gene ID: 5927  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Address: 826 Zhangheng Road, Shanghai 201203, People's Republic of China      ICP NO: Shanghai-05005485-2
Group Leader: wangrx@fudan.edu.cn      Tel: +86-21-54925128      Webmaster: liuhai@mail.sioc.ac.cn
Copyright ©2007-2020    Department of Medicinal Chemistry, School of Pharmacy, Fudan University, P.R. China