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Related entries of code: 5jox
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
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Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6f1jRCSB PDB    PDBbindEDG
Entry Information
PDB ID5jox
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBacteroides ovatus Xyloglucan PUL GH43A
Ligand NameEDG
EC.Number E.C.3.2.1.55
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=35uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Open Biology Vol. 6: pp. 160142
Ligand Properties
Formula C5H12NO3
Molecular Weight 134.154
Exact Mass 134.082
No. of atoms 21
No. of bonds 21
Polar Surface Area 77.3
LOGP Value -1.73      (Computed with XLOGP3)
-1.78      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A7LXT8  
Entrez Gene IDNCBI Entrez Gene ID: 29452222  
ASDInformation of known allosteric effects of PDB entries
 
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