Browse entries in the PDBbind-CN Database

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Related entries of code: 6f1j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5joxRCSB PDB    PDBbindEDG

Entry Information
PDB ID6f1j
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGH62 Arabinofuranosidase
Ligand NameEDG
EC.Number E.C.-.-.-.-
Resolution 1.25(Å)
Affinity (Kd/Ki/IC50)Kd=24uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Acta Crystallogr F Struct Biol Commun Vol. 74: pp. 490-495
Ligand Properties
Formula C5H12NO3
Molecular Weight 134.154
Exact Mass 134.082
No. of atoms 21
No. of bonds 21
Polar Surface Area 77.3
LOGP Value -1.73      (Computed with XLOGP3)
-1.78      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A2H5BN17  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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