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Related entries of code: 5khj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3otfRCSB PDB    PDBbind220aa, >3OTF_1|Chain... *
3u10RCSB PDB    PDBbind210aa, >3U10_1|Chain... at 90%
4hbnRCSB PDB    PDBbind205aa, >4HBN_1|Chain... at 99%
4nvpRCSB PDB    PDBbind209aa, >4NVP_1|Chain... at 97%
5khgRCSB PDB    PDBbind204aa, >5KHG_1|Chain... at 92%
5khhRCSB PDB    PDBbind204aa, >5KHH_1|Chain... at 92%
5khiRCSB PDB    PDBbind204aa, >5KHI_1|Chain... at 92%
5khkRCSB PDB    PDBbind204aa, >5KHK_1|Chain... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5khj
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (HCN2 CNBD)
Ligand Name6SY
EC.Number E.C.-.-.-.-
Resolution 2.01(Å)
Affinity (Kd/Ki/IC50)Kd=183.8uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Structure Vol. 24: pp. 1629-1642
Ligand Properties
Formula C9H12N2O8P
Molecular Weight 307.174
Exact Mass 307.033
No. of atoms 32
No. of bonds 34
Polar Surface Area 156.83
LOGP Value -3.04      (Computed with XLOGP3)
-2.13      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O88703  
Entrez Gene IDNCBI Entrez Gene ID: 15166  
ASDInformation of known allosteric effects of PDB entries
 
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