Browse entries in the PDBbind-CN Database

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Related entries of code: 3otf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3u10RCSB PDB    PDBbind210aa, >3U10_1|Chain... at 90%
4hbnRCSB PDB    PDBbind205aa, >4HBN_1|Chain... at 99%
4nvpRCSB PDB    PDBbind209aa, >4NVP_1|Chain... at 97%
5khgRCSB PDB    PDBbind204aa, >5KHG_1|Chain... at 92%
5khhRCSB PDB    PDBbind204aa, >5KHH_1|Chain... at 92%
5khiRCSB PDB    PDBbind204aa, >5KHI_1|Chain... at 92%
5khjRCSB PDB    PDBbind204aa, >5KHJ_1|Chains... at 92%
5khkRCSB PDB    PDBbind204aa, >5KHK_1|Chain... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2k0gRCSB PDB    PDBbindCMP
2oz6RCSB PDB    PDBbindCMP
3clpRCSB PDB    PDBbindCMP
3ocpRCSB PDB    PDBbindCMP
3u10RCSB PDB    PDBbindCMP
4clpRCSB PDB    PDBbindCMP
4hbnRCSB PDB    PDBbindCMP
5ahwRCSB PDB    PDBbindCMP
5btxRCSB PDB    PDBbindCMP
5k8sRCSB PDB    PDBbindCMP
5kbfRCSB PDB    PDBbindCMP
5o3qRCSB PDB    PDBbindCMP
5w10RCSB PDB    PDBbindCMP
6hq4RCSB PDB    PDBbindCMP
6hq3RCSB PDB    PDBbindCMP
Entry Information
PDB ID3otf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4,HCN4
Ligand NameCMP
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=0.83uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) J.Biol.Chem. Vol. 285: pp. 37082-37091
Ligand Properties
Formula C10H13N5O6P
Molecular Weight 330.214
Exact Mass 330.060
No. of atoms 35
No. of bonds 38
Polar Surface Area 171.59
LOGP Value -2.64      (Computed with XLOGP3)
-0.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y3Q4  
Entrez Gene IDNCBI Entrez Gene ID: 10021  
ASDInformation of known allosteric effects of PDB entries
 
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