Browse entries in the PDBbind-CN Database

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Related entries of code: 5k8s
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5kbfRCSB PDB    PDBbind301aa, >5KBF_1|Chains... *
5t3nRCSB PDB    PDBbind161aa, >5T3N_1|Chains... at 90%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2k0gRCSB PDB    PDBbindCMP
2oz6RCSB PDB    PDBbindCMP
3clpRCSB PDB    PDBbindCMP
3ocpRCSB PDB    PDBbindCMP
3otfRCSB PDB    PDBbindCMP
3u10RCSB PDB    PDBbindCMP
4clpRCSB PDB    PDBbindCMP
4hbnRCSB PDB    PDBbindCMP
5ahwRCSB PDB    PDBbindCMP
5btxRCSB PDB    PDBbindCMP
5kbfRCSB PDB    PDBbindCMP
5o3qRCSB PDB    PDBbindCMP
5w10RCSB PDB    PDBbindCMP
6hq4RCSB PDB    PDBbindCMP
6hq3RCSB PDB    PDBbindCMP
Entry Information
PDB ID5k8s
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameCAMP-dependent protein kinase regulatory subunit (PfPKAR 297-441)
Ligand NameCMP
EC.Number E.C.2.7.11.11
Resolution 1.15(Å)
Affinity (Kd/Ki/IC50)Kd=6nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J. Biol. Chem. Vol. 291: pp. 25375-25386
Ligand Properties
Formula C10H13N5O6P
Molecular Weight 330.214
Exact Mass 330.060
No. of atoms 35
No. of bonds 38
Polar Surface Area 171.59
LOGP Value -2.64      (Computed with XLOGP3)
-0.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q7KQK0  
Entrez Gene IDNCBI Entrez Gene ID: 811274  
ASDInformation of known allosteric effects of PDB entries
 
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