Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5kmh
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5klsRCSB PDB    PDBbind285aa, >5KLS_1|Chains... *
5kmfRCSB PDB    PDBbind285aa, >5KMF_1|Chains... at 99%
6mvxRCSB PDB    PDBbind285aa, >6MVX_1|Chains... at 98%
6kebRCSB PDB    PDBbind284aa, >6KEB_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5kmh
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namebacterial homotetrameric model CaV channel CaVAb
Ligand Name6U8
EC.Number E.C.-.-.-.-
Resolution 3.2(Å)
Affinity (Kd/Ki/IC50)IC50=24uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nature Vol. 537: pp. 117-121
Ligand Properties
Formula C25H36BrN2O2
Molecular Weight 476.470
Exact Mass 475.196
No. of atoms 66
No. of bonds 67
Polar Surface Area 46.75
LOGP Value 5.94      (Computed with XLOGP3)
4.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A8EVM5  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com