Browse entries in the PDBbind-CN Database

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Related entries of code: 5ld8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4c6uRCSB PDB    PDBbind439aa, >4C6U_1|Chain... *
4c6vRCSB PDB    PDBbind439aa, >4C6V_1|Chain... at 100%
4c6xRCSB PDB    PDBbind439aa, >4C6X_1|Chains... at 99%
4c6zRCSB PDB    PDBbind439aa, >4C6Z_1|Chains... at 99%
4c70RCSB PDB    PDBbind439aa, >4C70_1|Chains... at 99%
4c71RCSB PDB    PDBbind439aa, >4C71_1|Chains... at 99%
4c72RCSB PDB    PDBbind439aa, >4C72_1|Chains... at 99%
4c73RCSB PDB    PDBbind439aa, >4C73_1|Chains... at 99%
5w2sRCSB PDB    PDBbind439aa, >5W2S_1|Chain... at 99%
5w2qRCSB PDB    PDBbind439aa, >5W2Q_1|Chain... at 99%
5w2pRCSB PDB    PDBbind439aa, >5W2P_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5w2qRCSB PDB    PDBbind6U5
5w2pRCSB PDB    PDBbind6U5
Entry Information
PDB ID5ld8
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMycobacterium tuberculosis H37Rv KasA
Ligand Name6U5
EC.Number E.C.2.3.1.41
Resolution 2.13(Å)
Affinity (Kd/Ki/IC50)Kd=9nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat Commun Vol. 7: pp. 12581-12581
Ligand Properties
Formula C12H17N3O2S
Molecular Weight 267.347
Exact Mass 267.104
No. of atoms 35
No. of bonds 36
Polar Surface Area 72.37
LOGP Value 1.79      (Computed with XLOGP3)
3.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WQD9  
Entrez Gene IDNCBI Entrez Gene ID: 45426225  887269  
ASDInformation of known allosteric effects of PDB entries
 
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