Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5meh
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4aypRCSB PDB    PDBbind447aa, >4AYP_1|Chain... *
4ayqRCSB PDB    PDBbind447aa, >4AYQ_1|Chain... at 100%
4ayrRCSB PDB    PDBbind447aa, >4AYR_1|Chain... at 100%
5ne5RCSB PDB    PDBbind447aa, >5NE5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fo2RCSB PDB    PDBbindDMJ
1hxkRCSB PDB    PDBbindDMJ

Entry Information
PDB ID5meh
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMannosyl-oligosaccharide 1,2-alpha-mannosidase
Ligand NameDMJ
EC.Number E.C.3.2.1.113
Resolution 0.95(Å)
Affinity (Kd/Ki/IC50)Kd=481nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Chembiochem Vol. 18: pp. 1297-1304
Ligand Properties
Formula C6H14NO4
Molecular Weight 164.180
Exact Mass 164.092
No. of atoms 25
No. of bonds 25
Polar Surface Area 97.53
LOGP Value -2.35      (Computed with XLOGP3)
-2.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B0SWV2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com