Browse entries in the PDBbind-CN Database

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Related entries of code: 5ngf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5n9rRCSB PDB    PDBbind357aa, >5N9R_1|Chains... at 97%
5n9tRCSB PDB    PDBbind357aa, >5N9T_1|Chains... at 97%
5ngeRCSB PDB    PDBbind355aa, >5NGE_1|Chains... at 98%
5uqvRCSB PDB    PDBbind368aa, >5UQV_1|Chains... at 100%
5uqxRCSB PDB    PDBbind369aa, >5UQX_1|Chains... *
5vs6RCSB PDB    PDBbind353aa, >5VS6_1|Chains... at 98%
5vsbRCSB PDB    PDBbind353aa, >5VSB_1|Chains... at 98%
5vskRCSB PDB    PDBbind353aa, >5VSK_1|Chains... at 98%
5whcRCSB PDB    PDBbind346aa, >5WHC_1|Chains... at 100%
6f5hRCSB PDB    PDBbind357aa, >6F5H_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ngf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameUbiquitin carboxyl-terminal hydrolase 7
Ligand Name8WN
EC.Number E.C.3.4.19.12
Resolution 2.33(Å)
Affinity (Kd/Ki/IC50)Kd=7.8uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nature Vol. 550: pp. 481-486
Ligand Properties
Formula C27H30N6O5S
Molecular Weight 550.629
Exact Mass 550.200
No. of atoms 69
No. of bonds 73
Polar Surface Area 147.8
LOGP Value 1.34      (Computed with XLOGP3)
3.32      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q93009  
Entrez Gene IDNCBI Entrez Gene ID: 7874  
ASDInformation of known allosteric effects of PDB entries
 
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