Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5nkg
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5i9xRCSB PDB    PDBbind306aa, >5I9X_1|Chain... *
5i9yRCSB PDB    PDBbind306aa, >5I9Y_1|Chain... at 100%
5i9zRCSB PDB    PDBbind306aa, >5I9Z_1|Chain... at 100%
5ia0RCSB PDB    PDBbind306aa, >5IA0_1|Chains... at 100%
5ia1RCSB PDB    PDBbind306aa, >5IA1_1|Chain... at 100%
5ia2RCSB PDB    PDBbind306aa, >5IA2_1|Chain... at 100%
5ia3RCSB PDB    PDBbind306aa, >5IA3_1|Chain... at 100%
5ia4RCSB PDB    PDBbind306aa, >5IA4_1|Chain... at 100%
5ia5RCSB PDB    PDBbind306aa, >5IA5_1|Chain... at 100%
5njzRCSB PDB    PDBbind306aa, >5NJZ_1|Chain... at 100%
5nk2RCSB PDB    PDBbind306aa, >5NK2_1|Chain... at 100%
5nk3RCSB PDB    PDBbind306aa, >5NK3_1|Chain... at 100%
5nk4RCSB PDB    PDBbind306aa, >5NK4_1|Chain... at 100%
5nk6RCSB PDB    PDBbind306aa, >5NK6_1|Chain... at 100%
5nk7RCSB PDB    PDBbind306aa, >5NK7_1|Chain... at 100%
5nk8RCSB PDB    PDBbind306aa, >5NK8_1|Chain... at 100%
5nk9RCSB PDB    PDBbind306aa, >5NK9_1|Chain... at 100%
5nkaRCSB PDB    PDBbind306aa, >5NKA_1|Chain... at 100%
5nkbRCSB PDB    PDBbind306aa, >5NKB_1|Chain... at 100%
5nkcRCSB PDB    PDBbind306aa, >5NKC_1|Chain... at 100%
5nkdRCSB PDB    PDBbind306aa, >5NKD_1|Chain... at 100%
5nkhRCSB PDB    PDBbind306aa, >5NKH_1|Chain... at 100%
5nkiRCSB PDB    PDBbind306aa, >5NKI_1|Chain... at 100%
6fnfRCSB PDB    PDBbind306aa, >6FNF_1|Chain... at 100%
6fngRCSB PDB    PDBbind306aa, >6FNG_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5nkg
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameEphrin type-A receptor 2
Ligand Name8ZK
EC.Number E.C.2.7.10.1
Resolution 1.1(Å)
Affinity (Kd/Ki/IC50)Kd=21nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ChemMedChem Vol. 12: pp. 999-1011
Ligand Properties
Formula C25H29ClN5O2S
Molecular Weight 499.048
Exact Mass 498.173
No. of atoms 63
No. of bonds 66
Polar Surface Area 127.97
LOGP Value 5.19      (Computed with XLOGP3)
6.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P29317  
Entrez Gene IDNCBI Entrez Gene ID: 1969  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com