Browse entries in the PDBbind-CN Database

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Related entries of code: 5nxx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2b4lRCSB PDB    PDBbind268aa, >2B4L_1|Chain... *
2b4mRCSB PDB    PDBbind268aa, >2B4M_1|Chains... at 100%
3chgRCSB PDB    PDBbind268aa, >3CHG_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5nxx
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGlycine betaine ABC transport system glycine betaine-binding protein OpuAC
Ligand Name3Q7
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Ki=17uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Environ. Microbiol. Vol. 20: pp. 305-323
Ligand Properties
Formula C5H12AsO2
Molecular Weight 179.069
Exact Mass 179.005
No. of atoms 20
No. of bonds 19
Polar Surface Area 37.3
LOGP Value 3.00      (Computed with XLOGP3)
1.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P46922  
Entrez Gene IDNCBI Entrez Gene ID: 938354  
ASDInformation of known allosteric effects of PDB entries
 
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