Browse entries in the PDBbind-CN Database

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Related entries of code: 5om7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5om2RCSB PDB    PDBbind40aa, >5OM2_2|Chain... *
5om3RCSB PDB    PDBbind40aa, >5OM3_2|Chain... at 92%
6ftpRCSB PDB    PDBbind40aa, >6FTP_2|Chain... at 97%
6hgjRCSB PDB    PDBbind40aa, >6HGJ_2|Chain... at 95%
6hgiRCSB PDB    PDBbind40aa, >6HGI_2|Chain... at 95%
6hggRCSB PDB    PDBbind40aa, >6HGG_2|Chain... at 95%
6hgfRCSB PDB    PDBbind40aa, >6HGF_2|Chain... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1i1eRCSB PDB    PDBbindDM2
5mraRCSB PDB    PDBbindDM2
6ftpRCSB PDB    PDBbindDM2
Entry Information
PDB ID5om7
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameAlpha1-antichymotrypsin variant DBS-II
Ligand NameDM2
EC.Number E.C.-.-.-.-
Resolution 1.73(Å)
Affinity (Kd/Ki/IC50)Kd=1.8uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Proc. Natl. Acad. Sci. U.S.A. Vol. 115: pp. 5744-5749
Ligand Properties
Formula C27H30NO11
Molecular Weight 544.527
Exact Mass 544.182
No. of atoms 69
No. of bonds 73
Polar Surface Area 207.69
LOGP Value 1.22      (Computed with XLOGP3)
-0.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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