Browse entries in the PDBbind-CN Database

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Related entries of code: 6hgf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5om2RCSB PDB    PDBbind40aa, >5OM2_2|Chain... *
5om3RCSB PDB    PDBbind40aa, >5OM3_2|Chain... at 92%
5om7RCSB PDB    PDBbind40aa, >5OM7_2|Chain... at 97%
6ftpRCSB PDB    PDBbind40aa, >6FTP_2|Chain... at 97%
6hgjRCSB PDB    PDBbind40aa, >6HGJ_2|Chain... at 95%
6hgiRCSB PDB    PDBbind40aa, >6HGI_2|Chain... at 95%
6hggRCSB PDB    PDBbind40aa, >6HGG_2|Chain... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2v95RCSB PDB    PDBbindHCY
4p6xRCSB PDB    PDBbindHCY
5hgcRCSB PDB    PDBbindHCY
6nwlRCSB PDB    PDBbindHCY
6itqRCSB PDB    PDBbindHCY
6itpRCSB PDB    PDBbindHCY
6hggRCSB PDB    PDBbindHCY
Entry Information
PDB ID6hgf
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameNewBG-II
Ligand NameHCY
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Kd=9.6uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Struct.Biol. Vol. 207: pp. 169-182
Ligand Properties
Formula C21H30O5
Molecular Weight 362.460
Exact Mass 362.209
No. of atoms 56
No. of bonds 59
Polar Surface Area 94.83
LOGP Value 1.61      (Computed with XLOGP3)
1.78      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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