Browse entries in the PDBbind-CN Database

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Related entries of code: 5tef
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5gxhRCSB PDB    PDBbind757aa, >5GXH_1|Chain... at 99%
5thaRCSB PDB    PDBbind758aa, >5THA_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3hxiRCSB PDB    PDBbindGTG
3qx8RCSB PDB    PDBbindGTG

Entry Information
PDB ID5tef
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGem-associated protein 5
Ligand NameGTG
EC.Number E.C.-.-.-.-
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)Kd=4.0uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Genes Dev. Vol. 30: pp. 2376-2390
Ligand Properties
Formula C11H23N5O14P3
Molecular Weight 542.247
Exact Mass 542.045
No. of atoms 56
No. of bonds 58
Polar Surface Area 342.64
LOGP Value -5.48      (Computed with XLOGP3)
-3.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8TEQ6  
Entrez Gene IDNCBI Entrez Gene ID: 25929  
ASDInformation of known allosteric effects of PDB entries

 
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