Browse entries in the PDBbind-CN Database

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Related entries of code: 5ufp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3f1pRCSB PDB    PDBbind121aa, >3F1P_2|Chain... *
4ghiRCSB PDB    PDBbind121aa, >4GHI_2|Chain... at 100%
4gs9RCSB PDB    PDBbind121aa, >4GS9_2|Chain... at 100%
4xt2RCSB PDB    PDBbind121aa, >4XT2_1|Chains... at 100%
5tbmRCSB PDB    PDBbind117aa, >5TBM_2|Chain... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ufp
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehuman HIF2a-B*:ARNT-B* complex
Ligand Name86D
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=42.5nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nature Vol. 539: pp. 107-111
Ligand Properties
Formula C17H10F5NO4S
Molecular Weight 419.323
Exact Mass 419.025
No. of atoms 38
No. of bonds 40
Polar Surface Area 95.77
LOGP Value 3.31      (Computed with XLOGP3)
4.79      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q99814  P27540  
Entrez Gene IDNCBI Entrez Gene ID: 2034  405  
ASDInformation of known allosteric effects of PDB entries
 
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