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Related entries of code: 5umx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5umyRCSB PDB    PDBbind140aa, >5UMY_1|Chains... at 100%
6bbxRCSB PDB    PDBbind144aa, >6BBX_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1kyvRCSB PDB    PDBbindRBF
1l5rRCSB PDB    PDBbindRBF
2a58RCSB PDB    PDBbindRBF
2ccbRCSB PDB    PDBbindRBF
2fl5RCSB PDB    PDBbindRBF
2vx9RCSB PDB    PDBbindRBF
2vxaRCSB PDB    PDBbindRBF
4d1yRCSB PDB    PDBbindRBF
4zzdRCSB PDB    PDBbindRBF
5umwRCSB PDB    PDBbindRBF
Entry Information
PDB ID5umx
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGlyoxalase/bleomycin resisance protein/dioxygenase
Ligand NameRBF
EC.Number E.C.-.-.-.-
Resolution 1.59(Å)
Affinity (Kd/Ki/IC50)Kd=1.1uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Cell Chem Biol Vol. 25: pp. 1075-1085.e4
Ligand Properties
Formula C17H20N4O6
Molecular Weight 376.364
Exact Mass 376.138
No. of atoms 47
No. of bonds 49
Polar Surface Area 161.56
LOGP Value -1.30      (Computed with XLOGP3)
-1.68      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A125SA29  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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