Browse entries in the PDBbind-CN Database

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Related entries of code: 5wdc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4avgRCSB PDB    PDBbind204aa, >4AVG_1|Chains... at 97%
4awfRCSB PDB    PDBbind204aa, >4AWF_1|Chains... at 97%
4awgRCSB PDB    PDBbind204aa, >4AWG_1|Chains... at 97%
4awmRCSB PDB    PDBbind192aa, >4AWM_1|Chain... at 96%
4e5fRCSB PDB    PDBbind187aa, >4E5F_1|Chains... at 91%
4e5gRCSB PDB    PDBbind187aa, >4E5G_1|Chains... at 91%
4e5hRCSB PDB    PDBbind187aa, >4E5H_1|Chains... at 91%
4e5iRCSB PDB    PDBbind187aa, >4E5I_1|Chains... at 91%
4e5jRCSB PDB    PDBbind187aa, >4E5J_1|Chains... at 91%
4kilRCSB PDB    PDBbind213aa, >4KIL_1|Chain... at 98%
4ln7RCSB PDB    PDBbind209aa, >4LN7_1|Chain... at 100%
4m4qRCSB PDB    PDBbind241aa, >4M4Q_1|Chain... *
4m5oRCSB PDB    PDBbind241aa, >4M5O_1|Chain... at 100%
4m5rRCSB PDB    PDBbind241aa, >4M5R_1|Chain... at 100%
4m5uRCSB PDB    PDBbind241aa, >4M5U_1|Chain... at 100%
4mk1RCSB PDB    PDBbind241aa, >4MK1_1|Chain... at 100%
4mk2RCSB PDB    PDBbind241aa, >4MK2_1|Chain... at 100%
4mk5RCSB PDB    PDBbind241aa, >4MK5_1|Chain... at 100%
4w9sRCSB PDB    PDBbind241aa, >4W9S_1|Chain... at 100%
5cgvRCSB PDB    PDBbind187aa, >5CGV_1|Chain... at 94%
5egaRCSB PDB    PDBbind187aa, >5EGA_1|Chain... at 94%
5w44RCSB PDB    PDBbind178aa, >5W44_1|Chain... at 98%
5w73RCSB PDB    PDBbind197aa, >5W73_1|Chain... at 93%
5w7uRCSB PDB    PDBbind197aa, >5W7U_1|Chain... at 93%
5w92RCSB PDB    PDBbind197aa, >5W92_1|Chain... at 93%
5w9gRCSB PDB    PDBbind197aa, >5W9G_1|Chain... at 93%
5wa7RCSB PDB    PDBbind197aa, >5WA7_1|Chain... at 93%
5wapRCSB PDB    PDBbind197aa, >5WAP_1|Chain... at 93%
5wb3RCSB PDB    PDBbind197aa, >5WB3_1|Chain... at 93%
5wdwRCSB PDB    PDBbind197aa, >5WDW_1|Chain... at 93%
5we9RCSB PDB    PDBbind187aa, >5WE9_1|Chain... at 94%
5webRCSB PDB    PDBbind197aa, >5WEB_1|Chain... at 93%
5wefRCSB PDB    PDBbind187aa, >5WEF_1|Chain... at 93%
5weiRCSB PDB    PDBbind197aa, >5WEI_1|Chain... at 92%
5wf3RCSB PDB    PDBbind197aa, >5WF3_1|Chain... at 92%
5wfmRCSB PDB    PDBbind197aa, >5WFM_1|Chain... at 92%
5wfwRCSB PDB    PDBbind197aa, >5WFW_1|Chain... at 92%
5wfzRCSB PDB    PDBbind197aa, >5WFZ_1|Chain... at 92%
5wg9RCSB PDB    PDBbind197aa, >5WG9_1|Chain... at 92%
6dcyRCSB PDB    PDBbind192aa, >6DCY_1|Chain... at 96%
6dczRCSB PDB    PDBbind192aa, >6DCZ_1|Chain... at 96%
6dzqRCSB PDB    PDBbind192aa, >6DZQ_1|Chain... at 96%
6e0qRCSB PDB    PDBbind192aa, >6E0Q_1|Chain... at 96%
6nemRCSB PDB    PDBbind241aa, >6NEM_1|Chain... at 100%
6nelRCSB PDB    PDBbind241aa, >6NEL_1|Chain... at 100%
6e6wRCSB PDB    PDBbind192aa, >6E6W_1|Chain... at 96%
6e6vRCSB PDB    PDBbind192aa, >6E6V_1|Chain... at 96%
6e4cRCSB PDB    PDBbind192aa, >6E4C_1|Chain... at 96%
6e3pRCSB PDB    PDBbind192aa, >6E3P_1|Chain... at 96%
6e3nRCSB PDB    PDBbind192aa, >6E3N_1|Chain... at 96%
6e3oRCSB PDB    PDBbind192aa, >6E3O_1|Chain... at 96%
6e3mRCSB PDB    PDBbind192aa, >6E3M_1|Chain... at 96%
5wa6RCSB PDB    PDBbind197aa, >5WA6_1|Chain... at 93%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5w44RCSB PDB    PDBbindGY6
5wefRCSB PDB    PDBbindGY6
5weiRCSB PDB    PDBbindGY6
Entry Information
PDB ID5wdc
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePolymerase acidic protein
Ligand NameGY6
EC.Number E.C.3.1.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki=0.4uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Sci Rep Vol. 7: pp. 17139-17139
Ligand Properties
Formula C25H25ClN4O5
Molecular Weight 496.943
Exact Mass 496.151
No. of atoms 60
No. of bonds 63
Polar Surface Area 124.62
LOGP Value 3.50      (Computed with XLOGP3)
3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): C3W5S0  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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