Browse entries in the PDBbind-CN Database

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Related entries of code: 5wfd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5wf7RCSB PDB    PDBbind605aa, >5WF7_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5wf7RCSB PDB    PDBbindA9G
5wg6RCSB PDB    PDBbindA9G

Entry Information
PDB ID5wfd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePolycomb repressive complex 2 humanizing (hm) mutations
Ligand NameA9G
EC.Number E.C.-.-.-.-
Resolution 2.65(Å)
Affinity (Kd/Ki/IC50)IC50=26.2uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Sci Rep Vol. 8: pp. 9092-9092
Ligand Properties
Formula C31H39N6O2
Molecular Weight 527.680
Exact Mass 527.313
No. of atoms 78
No. of bonds 82
Polar Surface Area 99.63
LOGP Value 3.86      (Computed with XLOGP3)
5.63      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): G0RYC6  G0S8H7  G0SDW4  
Entrez Gene IDNCBI Entrez Gene ID: 18254659  18257030  18259361  
ASDInformation of known allosteric effects of PDB entries

 
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