Browse entries in the PDBbind-CN Database

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Related entries of code: 5wg6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2qxvRCSB PDB    PDBbind361aa, >2QXV_1|Chain... at 100%
3jzgRCSB PDB    PDBbind402aa, >3JZG_1|Chain... at 100%
3jzhRCSB PDB    PDBbind402aa, >3JZH_1|Chain... at 100%
3k27RCSB PDB    PDBbind366aa, >3K27_1|Chain... at 100%
5gsaRCSB PDB    PDBbind367aa, >5GSA_1|Chains... at 99%
5h13RCSB PDB    PDBbind376aa, >5H13_1|Chain... at 97%
5h14RCSB PDB    PDBbind367aa, >5H14_1|Chains... at 99%
5h15RCSB PDB    PDBbind367aa, >5H15_1|Chains... at 99%
5h17RCSB PDB    PDBbind367aa, >5H17_1|Chain... at 99%
5h19RCSB PDB    PDBbind367aa, >5H19_1|Chain... at 99%
5k0mRCSB PDB    PDBbind372aa, >5K0M_1|Chain... at 98%
5ttwRCSB PDB    PDBbind367aa, >5TTW_1|Chains... at 99%
5u5hRCSB PDB    PDBbind367aa, >5U5H_1|Chain... at 99%
5u5kRCSB PDB    PDBbind367aa, >5U5K_1|Chain... at 99%
5u5tRCSB PDB    PDBbind367aa, >5U5T_1|Chains... at 99%
5u62RCSB PDB    PDBbind367aa, >5U62_1|Chains... at 99%
5u69RCSB PDB    PDBbind369aa, >5U69_1|Chain... at 98%
5u6dRCSB PDB    PDBbind369aa, >5U6D_1|Chain... at 98%
5u8aRCSB PDB    PDBbind369aa, >5U8A_1|Chain... at 98%
5u8fRCSB PDB    PDBbind369aa, >5U8F_1|Chain... at 98%
5wukRCSB PDB    PDBbind366aa, >5WUK_1|Chain... at 99%
6sfcRCSB PDB    PDBbind366aa, >6SFC_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5wf7RCSB PDB    PDBbindA9G
5wfdRCSB PDB    PDBbindA9G
Entry Information
PDB ID5wg6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePolycomb repressive complex 2
Ligand NameA9G
EC.Number E.C.2.1.1.43
Resolution 3.9(Å)
Affinity (Kd/Ki/IC50)IC50=28.6uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Sci Rep Vol. 8: pp. 9092-9092
Ligand Properties
Formula C31H39N6O2
Molecular Weight 527.680
Exact Mass 527.313
No. of atoms 78
No. of bonds 82
Polar Surface Area 99.63
LOGP Value 3.86      (Computed with XLOGP3)
5.63      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q15022  Q15910  O75530  
Entrez Gene IDNCBI Entrez Gene ID: 23512  2146  8726  
ASDInformation of known allosteric effects of PDB entries
 
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