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Related entries of code: 5ze6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5zlfRCSB PDB    PDBbind323aa, >5ZLF_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ze6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOctaprenyl diphosphate synthase
Ligand NameHJX
EC.Number E.C.2.5.1.90
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)others=450uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 2564-2581
Ligand Properties
Formula C21H34O4
Molecular Weight 350.492
Exact Mass 350.246
No. of atoms 59
No. of bonds 59
Polar Surface Area 66.76
LOGP Value 9.37      (Computed with XLOGP3)
6.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AD57  
Entrez Gene IDNCBI Entrez Gene ID: 61751977  947364  
ASDInformation of known allosteric effects of PDB entries
 
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