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Related entries of code: 5zlf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ze6RCSB PDB    PDBbind323aa, >5ZE6_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2e93RCSB PDB    PDBbindB29
2e98RCSB PDB    PDBbindB29
3wqmRCSB PDB    PDBbindB29
4w4sRCSB PDB    PDBbindB29
Entry Information
PDB ID5zlf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOctaprenyl diphosphate synthase
Ligand NameB29
EC.Number E.C.2.5.1.90
Resolution 2.85(Å)
Affinity (Kd/Ki/IC50)others=330uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 2564-2581
Ligand Properties
Formula C20H20O8P2
Molecular Weight 450.316
Exact Mass 450.063
No. of atoms 50
No. of bonds 53
Polar Surface Area 181.93
LOGP Value 0.97      (Computed with XLOGP3)
2.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AD57  
Entrez Gene IDNCBI Entrez Gene ID: 61751977  947364  
ASDInformation of known allosteric effects of PDB entries
 
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