Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5zef
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5zeeRCSB PDB    PDBbind312aa, >5ZEE_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5zef
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameArginase
Ligand NameNVA
EC.Number E.C.3.5.3.1
Resolution 2.01(Å)
Affinity (Kd/Ki/IC50)IC50=17.9mM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Febs J. Vol. 286: pp. 4135-4155
Ligand Properties
Formula C5H12NO2
Molecular Weight 118.154
Exact Mass 118.087
No. of atoms 20
No. of bonds 19
Polar Surface Area 64.94
LOGP Value -1.23      (Computed with XLOGP3)
-0.52      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): C4LSS0  
Entrez Gene IDNCBI Entrez Gene ID: 3411304  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com