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Related entries of code: 5zhl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6jofRCSB PDB    PDBbind238aa, >6JOF_1|Chain... at 100%
5zhjRCSB PDB    PDBbind238aa, >5ZHJ_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5zhnRCSB PDB    PDBbind9D0

Entry Information
PDB ID5zhl
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NametRNA (guanine-N(1)-)-methyltransferase
Ligand Name9D0
EC.Number E.C.2.1.1.228
Resolution 2.25(Å)
Affinity (Kd/Ki/IC50)Kd=0.19uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 7788-7805
Ligand Properties
Formula C23H31N4O2S
Molecular Weight 427.583
Exact Mass 427.217
No. of atoms 61
No. of bonds 63
Polar Surface Area 119.7
LOGP Value 4.28      (Computed with XLOGP3)
3.73      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WFY7  
Entrez Gene IDNCBI Entrez Gene ID: 888495  
ASDInformation of known allosteric effects of PDB entries

 
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