Browse entries in the PDBbind-CN Database

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Related entries of code: 6jof
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5zhlRCSB PDB    PDBbind238aa, >5ZHL_1|Chain... at 100%
5zhjRCSB PDB    PDBbind238aa, >5ZHJ_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6joeRCSB PDB    PDBbindBWR

Entry Information
PDB ID6jof
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NametRNA (guanine-N(1)-)-methyltransferase
Ligand NameBWR
EC.Number E.C.2.1.1.228
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=10.4uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 7788-7805
Ligand Properties
Formula C20H25N5O2S
Molecular Weight 399.510
Exact Mass 399.173
No. of atoms 53
No. of bonds 56
Polar Surface Area 135.17
LOGP Value 0.94      (Computed with XLOGP3)
1.66      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WFY7  
Entrez Gene IDNCBI Entrez Gene ID: 888495  
ASDInformation of known allosteric effects of PDB entries

 
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