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Related entries of code: 6agt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4pg3RCSB PDB    PDBbind507aa, >4PG3_1|Chains... at 100%
4ycvRCSB PDB    PDBbind516aa, >4YCV_1|Chains... *
5zh2RCSB PDB    PDBbind507aa, >5ZH2_1|Chains... at 100%
5zh3RCSB PDB    PDBbind507aa, >5ZH3_1|Chains... at 100%
5zh4RCSB PDB    PDBbind507aa, >5ZH4_1|Chains... at 100%
5zh5RCSB PDB    PDBbind507aa, >5ZH5_1|Chains... at 100%
6hcvRCSB PDB    PDBbind503aa, >6HCV_1|Chains... at 100%
6hcuRCSB PDB    PDBbind507aa, >6HCU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6agt
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLysine--tRNA ligase
Ligand Name9X0
EC.Number E.C.6.1.1.6
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)IC50=4nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference () Vol. : pp. -
Ligand Properties
Formula C17H19NO3
Molecular Weight 285.338
Exact Mass 285.136
No. of atoms 40
No. of bonds 42
Polar Surface Area 59.31
LOGP Value 3.40      (Computed with XLOGP3)
3.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8IDJ8  
Entrez Gene IDNCBI Entrez Gene ID: 814227  
ASDInformation of known allosteric effects of PDB entries

 
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