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Related entries of code: 4pg3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ycvRCSB PDB    PDBbind516aa, >4YCV_1|Chains... *
5zh2RCSB PDB    PDBbind507aa, >5ZH2_1|Chains... at 100%
5zh3RCSB PDB    PDBbind507aa, >5ZH3_1|Chains... at 100%
5zh4RCSB PDB    PDBbind507aa, >5ZH4_1|Chains... at 100%
5zh5RCSB PDB    PDBbind507aa, >5ZH5_1|Chains... at 100%
6hcvRCSB PDB    PDBbind503aa, >6HCV_1|Chains... at 100%
6hcuRCSB PDB    PDBbind507aa, >6HCU_1|Chains... at 100%
6agtRCSB PDB    PDBbind507aa, >6AGT_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4ycuRCSB PDB    PDBbindKRS
4ycvRCSB PDB    PDBbindKRS
4ycwRCSB PDB    PDBbindKRS
5hgqRCSB PDB    PDBbindKRS
Entry Information
PDB ID4pg3
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLysine--tRNA ligase
Ligand NameKRS
EC.Number E.C.6.1.1.6
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=14nM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J. Struct. Funct. Genomics Vol. 15: pp. 63-71
Ligand Properties
Formula C16H20O5
Molecular Weight 292.327
Exact Mass 292.131
No. of atoms 41
No. of bonds 43
Polar Surface Area 75.99
LOGP Value 3.27      (Computed with XLOGP3)
2.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8IDJ8  
Entrez Gene IDNCBI Entrez Gene ID: 814227  
ASDInformation of known allosteric effects of PDB entries
 
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