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Related entries of code: 4ycu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4dpgRCSB PDB    PDBbind54aa, >4DPG_2|Chains... *
4ycwRCSB PDB    PDBbind42aa, >4YCW_2|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4pg3RCSB PDB    PDBbindKRS
4ycvRCSB PDB    PDBbindKRS
4ycwRCSB PDB    PDBbindKRS
5hgqRCSB PDB    PDBbindKRS

Entry Information
PDB ID4ycu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman lysyl-tRNA synthetase
Ligand NameKRS
EC.Number E.C.6.1.1.6
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=3.3uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Chem.Biol. Vol. 22: pp. 734-744
Ligand Properties
Formula C16H20O5
Molecular Weight 292.327
Exact Mass 292.131
No. of atoms 41
No. of bonds 43
Polar Surface Area 75.99
LOGP Value 3.27      (Computed with XLOGP3)
2.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q13155  Q15046  
Entrez Gene IDNCBI Entrez Gene ID: 7965  3735  
ASDInformation of known allosteric effects of PDB entries

 
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