Browse entries in the PDBbind-CN Database

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Related entries of code: 6ap8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5dj5RCSB PDB    PDBbind267aa, >5DJ5_1|Chains... at 99%
5yz7RCSB PDB    PDBbind274aa, >5YZ7_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6ap7RCSB PDB    PDBbindBNY

Entry Information
PDB ID6ap8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOsD14
Ligand NameBNY
EC.Number E.C.-.-.-.-
Resolution 1.27(Å)
Affinity (Kd/Ki/IC50)Kd=8.0uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. 293: pp. 6530-6543
Ligand Properties
Formula C14H12N2O4
Molecular Weight 272.256
Exact Mass 272.080
No. of atoms 32
No. of bonds 33
Polar Surface Area 95.15
LOGP Value 4.82      (Computed with XLOGP3)
3.94      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q10QA5  
Entrez Gene IDNCBI Entrez Gene ID: 4331983  
ASDInformation of known allosteric effects of PDB entries

 
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