Browse entries in the PDBbind-CN Database

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Related entries of code: 6bdy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6bm5RCSB PDB    PDBbind333aa, >6BM5_1|Chain... at 100%
6bm6RCSB PDB    PDBbind333aa, >6BM6_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1aqjRCSB PDB    PDBbindSFG
1qaqRCSB PDB    PDBbindSFG
2h2jRCSB PDB    PDBbindSFG
2xyrRCSB PDB    PDBbindSFG
3cbpRCSB PDB    PDBbindSFG
3lkzRCSB PDB    PDBbindSFG
6ox0RCSB PDB    PDBbindSFG
Entry Information
PDB ID6bdy
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMethionine synthase
Ligand NameSFG
EC.Number E.C.-.-.-.-
Resolution 1.51(Å)
Affinity (Kd/Ki/IC50)Kd=2.04uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Biochemistry Vol. 57: pp. 3733-3740
Ligand Properties
Formula C15H25N7O5
Molecular Weight 383.403
Exact Mass 383.192
No. of atoms 52
No. of bonds 54
Polar Surface Area 211.89
LOGP Value -4.28      (Computed with XLOGP3)
-2.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P13009  
Entrez Gene IDNCBI Entrez Gene ID: 948522  
ASDInformation of known allosteric effects of PDB entries
 
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