Browse entries in the PDBbind-CN Database

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Related entries of code: 6bid
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ur9RCSB PDB    PDBbind188aa, >3UR9_1|Chains... *
4imqRCSB PDB    PDBbind183aa, >4IMQ_1|Chain... at 98%
4imzRCSB PDB    PDBbind183aa, >4IMZ_1|Chain... at 98%
4inhRCSB PDB    PDBbind185aa, >4INH_1|Chains... at 97%
4xbbRCSB PDB    PDBbind188aa, >4XBB_1|Chain... at 100%
4xbdRCSB PDB    PDBbind188aa, >4XBD_1|Chains... at 100%
5dg6RCSB PDB    PDBbind188aa, >5DG6_1|Chains... at 98%
5dgjRCSB PDB    PDBbind188aa, >5DGJ_1|Chain... at 98%
5e0gRCSB PDB    PDBbind188aa, >5E0G_1|Chain... at 98%
5e0hRCSB PDB    PDBbind188aa, >5E0H_1|Chains... at 98%
5e0jRCSB PDB    PDBbind188aa, >5E0J_1|Chain... at 98%
5t6fRCSB PDB    PDBbind188aa, >5T6F_1|Chains... at 98%
5t6gRCSB PDB    PDBbind188aa, >5T6G_1|Chains... at 98%
5tg1RCSB PDB    PDBbind188aa, >5TG1_1|Chain... at 98%
5tg2RCSB PDB    PDBbind188aa, >5TG2_1|Chain... at 98%
5wejRCSB PDB    PDBbind188aa, >5WEJ_1|Chains... at 98%
6bicRCSB PDB    PDBbind188aa, >6BIC_1|Chains... at 98%
6bibRCSB PDB    PDBbind188aa, >6BIB_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6bid
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name3C-like protease
Ligand NameDW4
EC.Number E.C.3.4.22.66 ;3.6.1.15;2.7.7.48
Resolution 1.15(Å)
Affinity (Kd/Ki/IC50)IC50=2.9uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Proteins Vol. 87: pp. 579-587
Ligand Properties
Formula C29H41N7O6
Molecular Weight 583.679
Exact Mass 583.312
No. of atoms 83
No. of bonds 86
Polar Surface Area 176.57
LOGP Value 1.75      (Computed with XLOGP3)
2.34      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q83883  
Entrez Gene IDNCBI Entrez Gene ID: 1491970  
ASDInformation of known allosteric effects of PDB entries
 
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