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Related entries of code: 6czc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4wopRCSB PDB    PDBbind225aa, >4WOP_1|Chains... at 99%
6cveRCSB PDB    PDBbind235aa, >6CVE_1|Chains... *
6cvfRCSB PDB    PDBbind235aa, >6CVF_1|Chains... at 100%
6cvvRCSB PDB    PDBbind235aa, >6CVV_1|Chains... at 100%
6czbRCSB PDB    PDBbind235aa, >6CZB_1|Chains... at 100%
6czdRCSB PDB    PDBbind235aa, >6CZD_1|Chains... at 100%
6czeRCSB PDB    PDBbind235aa, >6CZE_1|Chains... at 100%
6e05RCSB PDB    PDBbind235aa, >6E05_1|Chains... at 100%
6e06RCSB PDB    PDBbind235aa, >6E06_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h79RCSB PDB    PDBbindTTP
1oe0RCSB PDB    PDBbindTTP
1zm7RCSB PDB    PDBbindTTP
2j4qRCSB PDB    PDBbindTTP
2j87RCSB PDB    PDBbindTTP
4uxjRCSB PDB    PDBbindTTP
5c2oRCSB PDB    PDBbindTTP
6ipjRCSB PDB    PDBbindTTP
Entry Information
PDB ID6czc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameATP-dependent dethiobiotin synthetase BioD
Ligand NameTTP
EC.Number E.C.6.3.3.3
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=16.5uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Acs Catalysis Vol. 8(11): pp. 10774-10783
Ligand Properties
Formula C10H20N2O14P3
Molecular Weight 485.192
Exact Mass 485.013
No. of atoms 49
No. of bonds 50
Polar Surface Area 294.39
LOGP Value -5.12      (Computed with XLOGP3)
-2.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WPQ5  
Entrez Gene IDNCBI Entrez Gene ID: 886338  
ASDInformation of known allosteric effects of PDB entries
 
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