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Related entries of code: 6e06
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4wopRCSB PDB    PDBbind225aa, >4WOP_1|Chains... at 99%
6cveRCSB PDB    PDBbind235aa, >6CVE_1|Chains... *
6cvfRCSB PDB    PDBbind235aa, >6CVF_1|Chains... at 100%
6cvvRCSB PDB    PDBbind235aa, >6CVV_1|Chains... at 100%
6czbRCSB PDB    PDBbind235aa, >6CZB_1|Chains... at 100%
6czcRCSB PDB    PDBbind235aa, >6CZC_1|Chains... at 100%
6czdRCSB PDB    PDBbind235aa, >6CZD_1|Chains... at 100%
6czeRCSB PDB    PDBbind235aa, >6CZE_1|Chains... at 100%
6e05RCSB PDB    PDBbind235aa, >6E05_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1wvcRCSB PDB    PDBbindCTP
2ad5RCSB PDB    PDBbindCTP
4wopRCSB PDB    PDBbindCTP
5eomRCSB PDB    PDBbindCTP
6cveRCSB PDB    PDBbindCTP
6e05RCSB PDB    PDBbindCTP
6pk7RCSB PDB    PDBbindCTP
6ak6RCSB PDB    PDBbindCTP
Entry Information
PDB ID6e06
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameATP-dependent dethiobiotin synthetase BioD
Ligand NameCTP
EC.Number E.C.6.3.3.3
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)IC50=54.4uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Acta Crystallogr D Struct Biol Vol. 74: pp. 965-972
Ligand Properties
Formula C9H21N3O14P3
Molecular Weight 488.196
Exact Mass 488.024
No. of atoms 50
No. of bonds 51
Polar Surface Area 318.12
LOGP Value -6.59      (Computed with XLOGP3)
-2.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WPQ5  
Entrez Gene IDNCBI Entrez Gene ID: 886338  
ASDInformation of known allosteric effects of PDB entries
 
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