Browse entries in the PDBbind-CN Database

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Related entries of code: 6d1x
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4nh9RCSB PDB    PDBbind273aa, >4NH9_1|Chain... *
6d28RCSB PDB    PDBbind273aa, >6D28_1|Chain... at 99%
6cyiRCSB PDB    PDBbind273aa, >6CYI_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6d1x
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEndoplasmin
Ligand NamePA7
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=6.3uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Biol.Chem. Vol. 294: pp. 16010-16019
Ligand Properties
Formula C13H18N6O4
Molecular Weight 322.320
Exact Mass 322.139
No. of atoms 41
No. of bonds 43
Polar Surface Area 148.41
LOGP Value -1.01      (Computed with XLOGP3)
-0.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41148  
Entrez Gene IDNCBI Entrez Gene ID: 404019  
ASDInformation of known allosteric effects of PDB entries

 
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