Browse entries in the PDBbind-CN Database

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Related entries of code: 6d28
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4nh9RCSB PDB    PDBbind273aa, >4NH9_1|Chain... *
6d1xRCSB PDB    PDBbind273aa, >6D1X_1|Chain... at 99%
6cyiRCSB PDB    PDBbind273aa, >6CYI_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2ydvRCSB PDB    PDBbindNEC
5g53RCSB PDB    PDBbindNEC
6gdgRCSB PDB    PDBbindNEC

Entry Information
PDB ID6d28
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameendoplasmin
Ligand NameNEC
EC.Number E.C.-.-.-.-
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Kd=200nM
Release Year2003
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v278 pp. 48330-8, 2003
Ligand Properties
Formula C12H16N6O4
Molecular Weight 308.293
Exact Mass 308.123
No. of atoms 38
No. of bonds 40
Polar Surface Area 148.41
LOGP Value -1.54      (Computed with XLOGP3)
-0.86      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41148  
Entrez Gene IDNCBI Entrez Gene ID: 404019  
ASDInformation of known allosteric effects of PDB entries

 
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