Browse entries in the PDBbind-CN Database

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Related entries of code: 6d3x
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1azgRCSB PDB    PDBbind14-mer
1bt6RCSB PDB    PDBbind14-mer
1eojRCSB PDB    PDBbind14-mer
1f3jRCSB PDB    PDBbind14-mer
1i3zRCSB PDB    PDBbind14-mer
1ihtRCSB PDB    PDBbind14-mer
1jbdRCSB PDB    PDBbind14-mer
1mv0RCSB PDB    PDBbind14-mer
1n5zRCSB PDB    PDBbind14-mer
1ntvRCSB PDB    PDBbind14-mer
1oj5RCSB PDB    PDBbind14-mer
1oxgRCSB PDB    PDBbind14-mer
1sfiRCSB PDB    PDBbind14-mer
1t29RCSB PDB    PDBbind14-mer
1x11RCSB PDB    PDBbind14-mer
1xh3RCSB PDB    PDBbind14-mer
1xn3RCSB PDB    PDBbind14-mer
1y19RCSB PDB    PDBbind14-mer
2fciRCSB PDB    PDBbind14-mer
2fx9RCSB PDB    PDBbind14-mer
2hugRCSB PDB    PDBbind14-mer
2jnwRCSB PDB    PDBbind14-mer
2l0iRCSB PDB    PDBbind14-mer
2l6eRCSB PDB    PDBbind14-mer
2l75RCSB PDB    PDBbind14-mer
2lo6RCSB PDB    PDBbind14-mer
2lozRCSB PDB    PDBbind14-mer
2ltwRCSB PDB    PDBbind14-mer
2n8tRCSB PDB    PDBbind14-mer
2oi3RCSB PDB    PDBbind14-mer
2w2uRCSB PDB    PDBbind14-mer
2xl2RCSB PDB    PDBbind14-mer
2xl3RCSB PDB    PDBbind14-mer
2xrwRCSB PDB    PDBbind14-mer
2xs0RCSB PDB    PDBbind14-mer
2y8oRCSB PDB    PDBbind14-mer
3d9kRCSB PDB    PDBbind14-mer
3d9lRCSB PDB    PDBbind14-mer
3d9mRCSB PDB    PDBbind14-mer
3d9nRCSB PDB    PDBbind14-mer
3d9oRCSB PDB    PDBbind14-mer
3d9pRCSB PDB    PDBbind14-mer
3g2wRCSB PDB    PDBbind14-mer
3lrhRCSB PDB    PDBbind14-mer
3meuRCSB PDB    PDBbind14-mer
3pknRCSB PDB    PDBbind14-mer
3rqeRCSB PDB    PDBbind14-mer
3so6RCSB PDB    PDBbind14-mer
3ualRCSB PDB    PDBbind14-mer
3wdzRCSB PDB    PDBbind14-mer
3wutRCSB PDB    PDBbind14-mer
3wuuRCSB PDB    PDBbind14-mer
3wuvRCSB PDB    PDBbind14-mer
4azaRCSB PDB    PDBbind14-mer
4ch2RCSB PDB    PDBbind14-mer
4ch8RCSB PDB    PDBbind14-mer
4erqRCSB PDB    PDBbind14-mer
4eryRCSB PDB    PDBbind14-mer
4erzRCSB PDB    PDBbind14-mer
4es0RCSB PDB    PDBbind14-mer
4ewrRCSB PDB    PDBbind14-mer
4fi9RCSB PDB    PDBbind14-mer
4glyRCSB PDB    PDBbind14-mer
4gxlRCSB PDB    PDBbind14-mer
4hgcRCSB PDB    PDBbind14-mer
4i7bRCSB PDB    PDBbind14-mer
4i7cRCSB PDB    PDBbind14-mer
4i7dRCSB PDB    PDBbind14-mer
4k1eRCSB PDB    PDBbind14-mer
4ktuRCSB PDB    PDBbind14-mer
4m1dRCSB PDB    PDBbind14-mer
4mnvRCSB PDB    PDBbind14-mer
4mnwRCSB PDB    PDBbind14-mer
4mnxRCSB PDB    PDBbind14-mer
4mnyRCSB PDB    PDBbind14-mer
4o4yRCSB PDB    PDBbind14-mer
4ofbRCSB PDB    PDBbind14-mer
4os2RCSB PDB    PDBbind14-mer
4os6RCSB PDB    PDBbind14-mer
4ov5RCSB PDB    PDBbind14-mer
4wv6RCSB PDB    PDBbind14-mer
5aerRCSB PDB    PDBbind14-mer
5dpwRCSB PDB    PDBbind14-mer
5e0lRCSB PDB    PDBbind14-mer
5eocRCSB PDB    PDBbind14-mer
5h5sRCSB PDB    PDBbind14-mer
5ixfRCSB PDB    PDBbind14-mer
5ly1RCSB PDB    PDBbind14-mer
5ly2RCSB PDB    PDBbind14-mer
5n8wRCSB PDB    PDBbind14-mer
5unjRCSB PDB    PDBbind14-mer
5vlhRCSB PDB    PDBbind14-mer
5vllRCSB PDB    PDBbind14-mer
5wbkRCSB PDB    PDBbind14-mer
5zooRCSB PDB    PDBbind14-mer
6axkRCSB PDB    PDBbind14-mer
6axlRCSB PDB    PDBbind14-mer
6b27RCSB PDB    PDBbind14-mer
6co4RCSB PDB    PDBbind14-mer
6qcgRCSB PDB    PDBbind14-mer
6qc0RCSB PDB    PDBbind14-mer
6pxcRCSB PDB    PDBbind14-mer
6o3wRCSB PDB    PDBbind14-mer
6o21RCSB PDB    PDBbind14-mer
6nk1RCSB PDB    PDBbind14-mer
6fzpRCSB PDB    PDBbind14-mer
6fzjRCSB PDB    PDBbind14-mer
6fzfRCSB PDB    PDBbind14-mer
6bvhRCSB PDB    PDBbind14-mer
6bcrRCSB PDB    PDBbind14-mer
5zk7RCSB PDB    PDBbind14-mer
5zjyRCSB PDB    PDBbind14-mer
5y21RCSB PDB    PDBbind14-mer
5xvwRCSB PDB    PDBbind14-mer
5vk0RCSB PDB    PDBbind14-mer
5ok6RCSB PDB    PDBbind14-mer
6bd1RCSB PDB    PDBbind14-mer
Entry Information
PDB ID6d3x
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePlasminogen
Ligand Name14-mer
EC.Number E.C.3.4.21.7
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=0.051nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J. Med. Chem. Vol. 62: pp. 552-560
Ligand Properties
Formula C72H108N19O19S2
Molecular Weight 1607.870
Exact Mass 1606.750
No. of atoms 220
No. of bonds 227
Polar Surface Area 634.19
LOGP Value -0.80      (Computed with XLOGP3)
-3.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 14
No. of Hydrogen Bond Acceptors: 18
No. of Rotatable Bonds: 22
No. of Nitrogen and Oxygen Atoms: 38
No. of Rings: 8
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q4GWU5  P00747  
Entrez Gene IDNCBI Entrez Gene ID: 5340  
ASDInformation of known allosteric effects of PDB entries
 
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