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Related entries of code: 6dry
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5tvnRCSB PDB    PDBbind402aa, >5TVN_1|Chain... at 100%
6drxRCSB PDB    PDBbind410aa, >6DRX_1|Chain... at 100%
6drzRCSB PDB    PDBbind411aa, >6DRZ_1|Chain... at 99%
6ds0RCSB PDB    PDBbind410aa, >6DS0_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6dry
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name5HT2B receptor, BRIL chimera
Ligand NameH8D
EC.Number E.C.-.-.-.-
Resolution 2.92(Å)
Affinity (Kd/Ki/IC50)Ki=0.37nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat. Struct. Mol. Biol. Vol. 25: pp. 787-796
Ligand Properties
Formula C20H26N3O2
Molecular Weight 340.439
Exact Mass 340.203
No. of atoms 51
No. of bonds 54
Polar Surface Area 69.56
LOGP Value 1.59      (Computed with XLOGP3)
2.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41595  P0ABE7  
Entrez Gene IDNCBI Entrez Gene ID: 3357  
ASDInformation of known allosteric effects of PDB entries

 
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