Browse entries in the PDBbind-CN Database

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Related entries of code: 6ds0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5tvnRCSB PDB    PDBbind402aa, >5TVN_1|Chain... at 100%
6drxRCSB PDB    PDBbind410aa, >6DRX_1|Chain... at 100%
6dryRCSB PDB    PDBbind411aa, >6DRY_1|Chain... *
6drzRCSB PDB    PDBbind411aa, >6DRZ_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6drxRCSB PDB    PDBbindH8G

Entry Information
PDB ID6ds0
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name5HT2B receptor, BRIL chimera
Ligand NameH8G
EC.Number E.C.-.-.-.-
Resolution 3.19(Å)
Affinity (Kd/Ki/IC50)IC50=2.2nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat. Struct. Mol. Biol. Vol. 25: pp. 787-796
Ligand Properties
Formula C21H24ClN2O2
Molecular Weight 371.880
Exact Mass 371.153
No. of atoms 50
No. of bonds 53
Polar Surface Area 50.86
LOGP Value 4.41      (Computed with XLOGP3)
5.12      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41595  P0ABE7  
Entrez Gene IDNCBI Entrez Gene ID: 3357  
ASDInformation of known allosteric effects of PDB entries

 
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