Browse entries in the PDBbind-CN Database

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Related entries of code: 6dyn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6dysRCSB PDB    PDBbind223aa, >6DYS_1|Chain... at 100%
6dyoRCSB PDB    PDBbind223aa, >6DYO_1|Chain... at 100%
6dyrRCSB PDB    PDBbind223aa, >6DYR_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1avnRCSB PDB    PDBbindHSM
1qftRCSB PDB    PDBbindHSM
3bu1RCSB PDB    PDBbindHSM
3rxhRCSB PDB    PDBbindHSM
6fu4RCSB PDB    PDBbindHSM
Entry Information
PDB ID6dyn
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameEbony
Ligand NameHSM
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=638.9uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference () Vol. : pp. -
Ligand Properties
Formula C5H10N3
Molecular Weight 112.153
Exact Mass 112.087
No. of atoms 18
No. of bonds 18
Polar Surface Area 56.32
LOGP Value -0.58      (Computed with XLOGP3)
-0.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A4GK78  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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