Browse entries in the PDBbind-CN Database

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Related entries of code: 6dys
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6dyoRCSB PDB    PDBbind223aa, >6DYO_1|Chain... at 100%
6dyrRCSB PDB    PDBbind223aa, >6DYR_1|Chain... at 100%
6dynRCSB PDB    PDBbind223aa, >6DYN_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6dys
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameEbony
Ligand NameHJ1
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=56.4uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Proc. Natl. Acad. Sci. U.S.A. Vol. 116: pp. 2913-2918
Ligand Properties
Formula C11H17N2O3
Molecular Weight 225.264
Exact Mass 225.124
No. of atoms 33
No. of bonds 33
Polar Surface Area 97.2
LOGP Value -0.22      (Computed with XLOGP3)
-0.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A4GK78  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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