Browse entries in the PDBbind-CN Database

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Related entries of code: 6gzm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3uytRCSB PDB    PDBbind296aa, >3UYT_1|Chains... at 98%
3uzpRCSB PDB    PDBbind296aa, >3UZP_1|Chains... at 98%
4hgtRCSB PDB    PDBbind296aa, >4HGT_1|Chains... at 98%
4hnfRCSB PDB    PDBbind296aa, >4HNF_1|Chains... at 98%
4hniRCSB PDB    PDBbind296aa, >4HNI_1|Chains... at 95%
4kb8RCSB PDB    PDBbind331aa, >4KB8_1|Chains... *
4kbaRCSB PDB    PDBbind331aa, >4KBA_1|Chains... at 100%
4kbcRCSB PDB    PDBbind317aa, >4KBC_1|Chains... at 99%
4kbkRCSB PDB    PDBbind331aa, >4KBK_1|Chains... at 100%
4tw9RCSB PDB    PDBbind295aa, >4TW9_1|Chains... at 98%
4twcRCSB PDB    PDBbind295aa, >4TWC_1|Chains... at 98%
5ih5RCSB PDB    PDBbind294aa, >5IH5_1|Chain... at 99%
5ih6RCSB PDB    PDBbind294aa, >5IH6_1|Chain... at 99%
5mqvRCSB PDB    PDBbind314aa, >5MQV_1|Chains... at 97%
5oktRCSB PDB    PDBbind314aa, >5OKT_1|Chains... at 97%
5w4wRCSB PDB    PDBbind331aa, >5W4W_1|Chains... at 100%
6hmrRCSB PDB    PDBbind314aa, >6HMR_1|Chains... at 97%
6hmpRCSB PDB    PDBbind314aa, >6HMP_1|Chains... at 97%
6f26RCSB PDB    PDBbind314aa, >6F26_1|Chains... at 97%
6f1wRCSB PDB    PDBbind314aa, >6F1W_2|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6gzdRCSB PDB    PDBbindLCI
6gzhRCSB PDB    PDBbindLCI
Entry Information
PDB ID6gzm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameCKIdelta
Ligand NameLCI
EC.Number E.C.-.-.-.-
Resolution 1.59(Å)
Affinity (Kd/Ki/IC50)Kd=5.5nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Cell Vol. 175: pp. 171-185.e25
Ligand Properties
Formula C18H26FN6
Molecular Weight 345.438
Exact Mass 345.220
No. of atoms 51
No. of bonds 54
Polar Surface Area 83.27
LOGP Value 2.40      (Computed with XLOGP3)
2.01      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P48730  
Entrez Gene IDNCBI Entrez Gene ID: 1453  
ASDInformation of known allosteric effects of PDB entries
 
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