Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6h50
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a1fRCSB PDB    PDBbind475aa, >5A1F_1|Chain... at 100%
5a3nRCSB PDB    PDBbind481aa, >5A3N_1|Chain... *
5a3tRCSB PDB    PDBbind481aa, >5A3T_1|Chain... at 100%
5a3wRCSB PDB    PDBbind481aa, >5A3W_1|Chain... at 100%
5fpuRCSB PDB    PDBbind481aa, >5FPU_1|Chain... at 100%
5funRCSB PDB    PDBbind481aa, >5FUN_1|Chain... at 100%
6h52RCSB PDB    PDBbind481aa, >6H52_1|Chain... at 100%
6h51RCSB PDB    PDBbind481aa, >6H51_1|Chain... at 100%
6h4zRCSB PDB    PDBbind481aa, >6H4Z_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6h4uRCSB PDB    PDBbindFO2
6h4qRCSB PDB    PDBbindFO2

Entry Information
PDB ID6h50
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameKDM5B
Ligand NameFO2
EC.Number E.C.-.-.-.-
Resolution 2.19(Å)
Affinity (Kd/Ki/IC50)IC50=0.156uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Eur.J.Med.Chem. Vol. 177: pp. 316-337
Ligand Properties
Formula C15H17N6O
Molecular Weight 297.335
Exact Mass 297.146
No. of atoms 39
No. of bonds 42
Polar Surface Area 93.07
LOGP Value 0.05      (Computed with XLOGP3)
1.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UGL1  
Entrez Gene IDNCBI Entrez Gene ID: 10765  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com