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Related entries of code: 5a1f
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a3nRCSB PDB    PDBbind481aa, >5A3N_1|Chain... *
5a3tRCSB PDB    PDBbind481aa, >5A3T_1|Chain... at 100%
5a3wRCSB PDB    PDBbind481aa, >5A3W_1|Chain... at 100%
5fpuRCSB PDB    PDBbind481aa, >5FPU_1|Chain... at 100%
5funRCSB PDB    PDBbind481aa, >5FUN_1|Chain... at 100%
6h52RCSB PDB    PDBbind481aa, >6H52_1|Chain... at 100%
6h51RCSB PDB    PDBbind481aa, >6H51_1|Chain... at 100%
6h50RCSB PDB    PDBbind481aa, >6H50_1|Chain... at 100%
6h4zRCSB PDB    PDBbind481aa, >6H4Z_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h2kRCSB PDB    PDBbindOGA
2oq6RCSB PDB    PDBbindOGA
2qrlRCSB PDB    PDBbindOGA
2xmlRCSB PDB    PDBbindOGA
3hqrRCSB PDB    PDBbindOGA
4idzRCSB PDB    PDBbindOGA
4nhxRCSB PDB    PDBbindOGA
4nrpRCSB PDB    PDBbindOGA
4xdoRCSB PDB    PDBbindOGA

Entry Information
PDB ID5a1f
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman KDM5B
Ligand NameOGA
EC.Number E.C.1.14.11
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=24.5uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat.Chem.Biol. Vol. 12: pp. 539-548
Ligand Properties
Formula C4H5NO5
Molecular Weight 147.086
Exact Mass 147.017
No. of atoms 15
No. of bonds 14
Polar Surface Area 103.7
LOGP Value 0.63      (Computed with XLOGP3)
-1.34      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UGL1  
Entrez Gene IDNCBI Entrez Gene ID: 10765  
ASDInformation of known allosteric effects of PDB entries

 
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